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Discovery of bromobenzyl phenyl ether derivative YPD-29B: a novel pre-clinical compound targeting the programmed cell death-1/programmed cell death-ligand 1 (PD-1/PD-L1) interaction.

Bioorganic & medicinal chemistry 2025 Vol.130() p. 118366

Yang Y, Xu M, Wang K, Xia L, Ning Q, Wu X, Zang X, Lai F, Chen X, Feng Z

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Targeting the PD-1/PD-L1 immune checkpoint pathway with small molecules has exhibited great promise.

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BibTeX ↓ RIS ↓
APA Yang Y, Xu M, et al. (2025). Discovery of bromobenzyl phenyl ether derivative YPD-29B: a novel pre-clinical compound targeting the programmed cell death-1/programmed cell death-ligand 1 (PD-1/PD-L1) interaction.. Bioorganic & medicinal chemistry, 130, 118366. https://doi.org/10.1016/j.bmc.2025.118366
MLA Yang Y, et al.. "Discovery of bromobenzyl phenyl ether derivative YPD-29B: a novel pre-clinical compound targeting the programmed cell death-1/programmed cell death-ligand 1 (PD-1/PD-L1) interaction.." Bioorganic & medicinal chemistry, vol. 130, 2025, pp. 118366.
PMID 40850195

Abstract

Targeting the PD-1/PD-L1 immune checkpoint pathway with small molecules has exhibited great promise. Herein, to develop the inhibitors with good activity, pharmacokinetic properties and druggability, a novel series of halogens substituted derivatives at the 2-position of the biphenyl group were synthesized, screened, and their inhibitory activity against the PD-1/PD-L1 protein-protein interaction (PPI) was evaluated through a HTRF assay. Among them, YPD-29B exhibited potent activity with IC value of less than 1 pM. Furthermore, the PBMC-based PD-1/PD-L1 blockade bioassay revealed that YPD-29B could inhibit the PD-1/PD-L1 interaction and restore T-cell function with the concentration of 10 nM at the cellular level and with the IC value of 0.18 nM. However, the poor solubility of YPD-29B limited the evaluation of antitumor activity in vivo. Thus, the prodrug, sodium salt and hydrochloride of YPD-29B were designed and synthesized to conduct the animal experiments, revealing the obvious anti-melanoma activity of YPD-29B-Na with TGI of 64.11 % and weak toxicity on the blood index and the body weight compared with the positive control CTX. T lymphocyte infiltration markedly increased in tumors of the different treated groups, suggesting the activation of the immune system. Besides, molecular docking verified the rationality of the design. IMMH-010, as a prodrug of YPD-29B has been approved for clinical phase I by NMPA. We hope these above results could offer a novel perspective for the development of PD-1/PD-L1 small molecule inhibitors.

MeSH Terms

Programmed Cell Death 1 Receptor; B7-H1 Antigen; Humans; Animals; Structure-Activity Relationship; Antineoplastic Agents; Mice; Molecular Structure; Phenyl Ethers; Drug Discovery; Drug Screening Assays, Antitumor; Dose-Response Relationship, Drug; Molecular Docking Simulation; Cell Proliferation; Immune Checkpoint Inhibitors; Cell Line, Tumor; Protein Binding

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